Numerical Ecology

Author: P. Legendre
Publisher: Elsevier
ISBN: 0444538690
Format: PDF
Download Now
The book describes and discusses the numerical methods which are successfully being used for analysing ecological data, using a clear and comprehensive approach. These methods are derived from the fields of mathematical physics, parametric and nonparametric statistics, information theory, numerical taxonomy, archaeology, psychometry, sociometry, econometry and others. An updated, 3rd English edition of the most widely cited book on quantitative analysis of multivariate ecological data Relates ecological questions to methods of statistical analysis, with a clear description of complex numerical methods All methods are illustrated by examples from the ecological literature so that ecologists clearly see how to use the methods and approaches in their own research All calculations are available in R language functions

Numerical Ecology with R

Author: Daniel Borcard
Publisher: Springer
ISBN: 331971404X
Format: PDF, Mobi
Download Now
This new edition of Numerical Ecology with R guides readers through an applied exploration of the major methods of multivariate data analysis, as seen through the eyes of three ecologists. It provides a bridge between a textbook of numerical ecology and the implementation of this discipline in the R language. The book begins by examining some exploratory approaches. It proceeds logically with the construction of the key building blocks of most methods, i.e. association measures and matrices, and then submits example data to three families of approaches: clustering, ordination and canonical ordination. The last two chapters make use of these methods to explore important and contemporary issues in ecology: the analysis of spatial structures and of community diversity. The aims of methods thus range from descriptive to explanatory and predictive and encompass a wide variety of approaches that should provide readers with an extensive toolbox that can address a wide palette of questions arising in contemporary multivariate ecological analysis. The second edition of this book features a complete revision to the R code and offers improved procedures and more diverse applications of the major methods. It also highlights important changes in the methods and expands upon topics such as multiple correspondence analysis, principal response curves and co-correspondence analysis. New features include the study of relationships between species traits and the environment, and community diversity analysis. This book is aimed at professional researchers, practitioners, graduate students and teachers in ecology, environmental science and engineering, and in related fields such as oceanography, molecular ecology, agriculture and soil science, who already have a background in general and multivariate statistics and wish to apply this knowledge to their data using the R language, as well as people willing to accompany their disciplinary learning with practical applications. People from other fields (e.g. geology, geography, paleoecology, phylogenetics, anthropology, the social and education sciences, etc.) may also benefit from the materials presented in this book. Users are invited to use this book as a teaching companion at the computer. All the necessary data files, the scripts used in the chapters, as well as extra R functions and packages written by the authors of the book, are available online (URL: http://adn.biol.umontreal.ca/~numericalecology/numecolR/).

Metacommunities

Author: Marcel Holyoak
Publisher: University of Chicago Press
ISBN: 0226350649
Format: PDF
Download Now
Until recently community ecology—a science devoted to understanding the patterns and processes of species distribution and abundance—focused mainly on specific and often limited scales of a single community. Since the 1970s, for example, metapopulation dynamics—studies of interacting groups of populations connected through movement—concentrated on the processes of population turnover, extinction, and establishment of new populations. Metacommunities takes the hallmarks of metapopulation theory to the next level by considering a group of communities, each of which may contain numerous populations, connected by species interactions within communities and the movement of individuals between communities. In examining communities open to dispersal, the book unites a broad range of ecological theories, presenting some of the first empirical investigations and revealing the value of the metacommunity approach. The collection of empirical, theoretical, and synthetic chapters in Metacommunities seeks to understand how communities work in fragmented landscapes. Encouraging community ecologists to rethink some of the leading theories of population and community dynamics, Metacommunities urges ecologists to expand the spatiotemporal scales of their research.

Multivariate Analysis of Ecological Data using CANOCO 5

Author: Petr Šmilauer
Publisher: Cambridge University Press
ISBN: 1139953044
Format: PDF, ePub, Docs
Download Now
This revised and updated edition focuses on constrained ordination (RDA, CCA), variation partitioning and the use of permutation tests of statistical hypotheses about multivariate data. Both classification and modern regression methods (GLM, GAM, loess) are reviewed and species functional traits and spatial structures analysed. Nine case studies of varying difficulty help to illustrate the suggested analytical methods, using the latest version of Canoco 5. All studies utilise descriptive and manipulative approaches, and are supported by data sets and project files available from the book website: http://regent.prf.jcu.cz/maed2/. Written primarily for community ecologists needing to analyse data resulting from field observations and experiments, this book is a valuable resource to students and researchers dealing with both simple and complex ecological problems, such as the variation of biotic communities with environmental conditions or their response to experimental manipulation.

Mixed Effects Models and Extensions in Ecology with R

Author: Alain Zuur
Publisher: Springer Science & Business Media
ISBN: 9780387874586
Format: PDF, ePub, Mobi
Download Now
This book discusses advanced statistical methods that can be used to analyse ecological data. Most environmental collected data are measured repeatedly over time, or space and this requires the use of GLMM or GAMM methods. The book starts by revising regression, additive modelling, GAM and GLM, and then discusses dealing with spatial or temporal dependencies and nested data.

Models of the Ecological Hierarchy

Author: Ferenc Jordán
Publisher: Newnes
ISBN: 0444593969
Format: PDF, Mobi
Download Now
"Based on selected papers covering the presentations at the 7th European Conference on Ecological Modelling, organized by ISEM and hosted by The Microsoft Research--University of Trento Center for Computational and Systems Biology from 30 May to 2 June, 2011 in Riva del Garde, Italy"--P. xi.

The Theory of Ecology

Author: Samuel M. Scheiner
Publisher: University of Chicago Press
ISBN: 0226736865
Format: PDF, Kindle
Download Now
Despite claims to the contrary, the science of ecology has a long history of building theories. Many ecological theories are mathematical, computational, or statistical, though, and rarely have attempts been made to organize or extrapolate these models into broader theories. The Theory of Ecology brings together some of the most respected and creative theoretical ecologists of this era to advance a comprehensive, conceptual articulation of ecological theories. The contributors cover a wide range of topics, from ecological niche theory to population dynamic theory to island biogeography theory. Collectively, the chapters ably demonstrate how theory in ecology accounts for observations about the natural world and how models provide predictive understandings. It organizes these models into constitutive domains that highlight the strengths and weaknesses of ecological understanding. This book is a milestone in ecological theory and is certain to motivate future empirical and theoretical work in one of the most exciting and active domains of the life sciences.

Ecological Model Types

Author:
Publisher: Elsevier
ISBN: 0444636269
Format: PDF
Download Now
Ecological Model Types brings an understanding on how to quantitatively analyze complex and dynamic ecosystems with the tools available today. Ecosystem studies widely use the notions of order, complexity, randomness, and organization, and are used interchangeably in literature, which causes much confusion. Better models synthesize our knowledge on ecosystems and their environmental problems, in contrast to statistical analysis, which only reveal the relationships between the data. This book brings together experts on ecological models to create a definitive work on how to understand our complex Earth. Bridges the gap between statistical analysis and synthesis of data, enhancing our understanding about ecosystems and their environmental problems Helps readers understand complex ecosystems by walking through the best modeling options to analyze and predict environmental effects Provides a detailed review of 14 model types, covering the breadth of options available for analysis at this time

The R Book

Author: Michael J. Crawley
Publisher: John Wiley & Sons
ISBN: 1118448960
Format: PDF, ePub, Mobi
Download Now
Hugely successful and popular text presenting an extensive and comprehensive guide for all R users The R language is recognized as one of the most powerful and flexible statistical software packages, enabling users to apply many statistical techniques that would be impossible without such software to help implement such large data sets. R has become an essential tool for understanding and carrying out research. This edition: Features full colour text and extensive graphics throughout. Introduces a clear structure with numbered section headings to help readers locate information more efficiently. Looks at the evolution of R over the past five years. Features a new chapter on Bayesian Analysis and Meta-Analysis. Presents a fully revised and updated bibliography and reference section. Is supported by an accompanying website allowing examples from the text to be run by the user. Praise for the first edition: ‘…if you are an R user or wannabe R user, this text is the one that should be on your shelf. The breadth of topics covered is unsurpassed when it comes to texts on data analysis in R.’ (The American Statistician, August 2008) ‘The High-level software language of R is setting standards in quantitative analysis. And now anybody can get to grips with it thanks to The R Book…’ (Professional Pensions, July 2007)

Ecological Modelling and Engineering of Lakes and Wetlands

Author:
Publisher: Elsevier
ISBN: 0444632557
Format: PDF, ePub, Mobi
Download Now
Ecological modelling has developed rapidly in recent decades, with the focus primarily on the restoration of lakes and wetlands. Ecological Modelling and Engineering in Lakes and Wetlands presents the progress being made in modelling for a wealth of applications. It covers the older biogeochemical models still in use today, structurally dynamic models, 3D models, biophysical models, entire watershed models, and ecotoxicological models, as well as the expansion of modeling to the Arctic and Antarctic climate-zones. The book also addresses modelling the effect of climate change, including the development of ecological models for addressing storm water pond issues, which are increasingly important in urban regions where more concentrated rainfalls are a consequence of climate change. The ecological engineering topics covered in the book also emphasize the advancements being made in applying ecological engineering regimes for better environmental management of lakes and wetlands. Examines recent progress towards a better understanding of these two important ecosystems Presents new results and approaches that can be used to develop better models Discusses how to increase the synergistic effect between ecosystems engineering and modelling